GET all publicly-listed samples. Returns a paginated list of Samples.
Authorizations
X-API-Key
string
header
required
Query Parameters
page
integer<int32>
default:1
Page number. Defaults to 1. See Pagination for more details.
per_page
integer<int32>
default:20
Number of requested paginated records. Defaults to 50. See Pagination for more details.
sort
string | null
Optional Mongo-style JSON sort clause, e.g., sort={"created_at": true} to sort by created_at (descending)
where
string | null
Optional Mongo-style JSON filter clause, e.g., where={"$uri": {"$eq": "/api/v1/samples/0ee172af60e84f61"}}. This endpoint additionally supports filtering on properties that are not fields on the returned objects: tax_ids (supports $containsall). Filters to samples whose primary classification detected every one of the given NCBI taxonomy IDs.
Response
200 - application/json
OK
$uri
string
required
read-only
Pattern: ^/api/v1/samples/[a-f0-9]{16}$
Example:
"/api/v1/samples/0d77065796f8d173"
created_at
string<date-time>
required
Timestamp for when the object was created on the One Codex platform, encoded as a RFC 3339 timestamp.
metadata
metadata · object
required
A metadata object.
Show child attributes
owner
users · object
required
The owner of the sample.
Show child attributes
primary_classification
classifications · object | null
required
A reference to a Classification for the sample. This will typically be the One Codex Database or Targeted Loci Database results as appropriate. Note that samples will not have a primary_classification while they are still importing or being uploaded.
Show child attributes
status
enum<string>
required
Enum for user-facing data status.
This is a subset of DataStatus for the status attribute in the APIs.
Available options:
awaiting_data,
importing,
validating,
failed_validation,
available,
deleted
visibility
enum<string>
required
Enum for the v1 API visibility attribute.
Note: this is legacy and only exists for backwards-compatibility in the public v1 API.
Available options:
public,
shared,
private,
importing,
awaiting data
error_msg
string | null
An error message if the sample failed to upload, import, or validate.
filename
string | null
The sample filename.
project
projects · object
The project the sample belongs to (optional).
projects
Project
Show child attributes
size
integer | null
The size of the uploaded file in bytes.
tags
tags · object[]
An (optionally empty) array of references to Tags describing the sample. Tags are an additional unstructured organizational tool that complement Projects and Metadata records.
Show child attributes
updated_at
string<date-time> | null
Timestamp for when the object was last updated on the One Codex platform, encoded as a RFC 3339 timestamp.
⌘I
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