GET the structured MLST result for a single analysis — the assigned sequence type (ST), the per-locus allele calls, and the MLST scheme used. The returned JSON has the following top-level structure:
Property
Description
panelResultsobject
An object consisting of 1 or more “sub-panels”, which include detailed alignment statistics (e.g., coverage, depth, etc.) for marker alleles used to determine sequence types (format below).
mlstResultsobject
An object containing sequence type information and detected alleles.
The panel_results object itself contains 1 or more sub-panels which describe alignment statistics for all markers. Each marker is a separate allele that is used to determine a sequence type. The markers themselves contain the following fields.
Property
Description
namestring
The name of the marker sequence, this includes the gene and allele number.
statusstring
Whether the marker sequence is ‘present’, ‘probable’, or ‘absent’. This determination is based on the below fields, but cutoff values may differ between panels. The default thresholds are identity and coverage >= 99% for “present” and >= 95% for “probable”
lengthinteger
The length of the marker sequence.
pct_identitynumber
The percent identity of the detected marker sequence in the sample.
coveragenumber
The breadth of coverage of the detected marker sequence in the sample.
depthnumber
The depth of coverage for the detected marker sequence in the sample.
n_readsinteger
The number of reads aligned to the marker sequence.
Warning: The above JSON format is not guaranteed to remain stable, though we do not expect to substantively alter the meaning of any fields. Please use caution and include fallbacks when writing non-exploratory code using the above route. Please also feel free to reach out if you’d like to discuss this format and any forthcoming changes with us.
Authorizations
X-API-Key
string
header
required
Path Parameters
id
string
required
Response
200 - application/json
OK
mlstResults
_MlstResults · object
required
Show child attributes
panelResults
any
required
⌘I
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